Developer Documentation

This section contains documentation for developers working on or extending siRNAforge.

• siRNAforge Architecture
  • Short version (TL;DR)
  • Overview
  • System Architecture Flow
  • Package Structure
  • Architectural Layers
  • Design Principles
  • Data Flow
  • Extension Points
  • Performance Considerations
  • Testing Architecture
  • Deployment Architecture
  • Future Architecture Considerations
• Development Guide
  • Development Environment Setup
  • Make Commands Reference
  • Development Workflow
  • Branching & Release Strategy
  • Code Style and Standards
  • Testing Best Practices
  • Contribution Guidelines
  • Advanced Development
  • Debugging
  • Release Process
  • Getting Help
• Testing Guide
  • Quick Commands
  • Local Development Testing
  • Docker Testing (Comprehensive Validation)
  • Best Practices
  • Quick Health Checks
• Comprehensive Review: Chemical Modification Handling in siRNAforge
  • Executive Summary
  • Current Infrastructure
  • Integration Opportunities
  • Recommended Integration Strategy
  • Implementation Patterns
  • Modification Pattern Library
  • Testing Strategy
  • Recommendations Summary
  • Conclusion
  • Appendix: Common Modification Types

Quick Links

• Architecture Overview: System design and data flow

• Development Setup: Environment setup and contribution guidelines

• Testing Guide: Test categories, Docker testing, and running tests

• Chemical Modifications: Review of modification implementation