All modules for which code is available

• sirnaforge.cli
• sirnaforge.config.reference_policy
• sirnaforge.core.design
• sirnaforge.core.off_target
• sirnaforge.core.thermodynamics
• sirnaforge.data.annotation_manager
• sirnaforge.data.base
• sirnaforge.data.gene_search
• sirnaforge.data.genome_manager
• sirnaforge.data.mirna_manager
• sirnaforge.data.orf_analysis
• sirnaforge.data.reference_manager
• sirnaforge.data.species_registry
• sirnaforge.data.transcript_annotation
• sirnaforge.data.transcriptome_filter
• sirnaforge.data.transcriptome_manager
• sirnaforge.data.variant_cache
• sirnaforge.data.variant_helpers
• sirnaforge.data.variant_resolver
• sirnaforge.models.modifications
• sirnaforge.models.off_target
• sirnaforge.models.schemas
• sirnaforge.models.sirna
• sirnaforge.models.transcript_annotation
• sirnaforge.models.variant
• sirnaforge.models.zfn
• sirnaforge.modifications
• sirnaforge.pipeline.nextflow.config
• sirnaforge.pipeline.nextflow.runner
• sirnaforge.pipeline.nextflow_cli
• sirnaforge.pipeline.resources.resources
• sirnaforge.utils.cache_utils
• sirnaforge.utils.cli_inputs
• sirnaforge.utils.control_candidates
• sirnaforge.utils.fasta
• sirnaforge.utils.logging_utils
• sirnaforge.utils.modification_patterns
• sirnaforge.utils.resource_resolver
• sirnaforge.utils.species
• sirnaforge.utils.typed_decorators
• sirnaforge.utils.unified_cache
• sirnaforge.validation.config
• sirnaforge.validation.middleware
• sirnaforge.validation.utils
• sirnaforge.workflow
• sirnaforge.workflow_variant
• sirnaforge.zfn.annotation
• sirnaforge.zfn.benchmark_data
• sirnaforge.zfn.design
• sirnaforge.zfn.experimental
• sirnaforge.zfn.interfaces
• sirnaforge.zfn.nextflow_bridge
• sirnaforge.zfn.rank
• sirnaforge.zfn.search