All modules for which code is available

• sirnaforge.cli
• sirnaforge.core.design
• sirnaforge.core.off_target
• sirnaforge.core.thermodynamics
• sirnaforge.data.base
• sirnaforge.data.gene_search
• sirnaforge.data.mirna_manager
• sirnaforge.data.orf_analysis
• sirnaforge.data.species_registry
• sirnaforge.data.transcript_annotation
• sirnaforge.models.modifications
• sirnaforge.models.off_target
• sirnaforge.models.schemas
• sirnaforge.models.sirna
• sirnaforge.models.transcript_annotation
• sirnaforge.modifications
• sirnaforge.pipeline.nextflow.config
• sirnaforge.pipeline.nextflow.runner
• sirnaforge.pipeline.nextflow_cli
• sirnaforge.utils.logging_utils
• sirnaforge.utils.modification_patterns
• sirnaforge.utils.resource_resolver
• sirnaforge.validation.config
• sirnaforge.validation.middleware
• sirnaforge.validation.utils
• sirnaforge.workflow